{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/causal-learning-in-biomedical-applications","title":"Causal Learning in Biomedical Applications: A Benchmark","arxiv_id":"2406.15189","date":"2024-06-21","proceeding":null,"authors":["Petr Ryšavý","Xiaoyu He","Jakub Mareček"],"abstract":"Learning causal relationships between a set of variables is a challenging problem in computer science. Many existing artificial benchmark datasets are based on sampling from causal models and thus contain residual information that the ${R} ^2$-sortability can identify. Here, we present a benchmark for methods in causal learning using time series. The presented dataset is not ${R}^2$-sortable and is based on a real-world scenario of the Krebs cycle that is used in cells to release energy. We provide four scenarios of learning, including short and long time series, and provide guidance so that testing is unified between possible users.","url_abs":"https://arxiv.org/abs/2406.15189v2","url_pdf":"https://arxiv.org/pdf/2406.15189v2.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[{"paper_slug":"causal-learning-in-biomedical-applications","repo_url":"https://github.com/petrrysavy/krebsdynotears","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":null}],"tasks":[{"task_slug":"time-series-1","task_name":"Time Series"}],"methods":[{"method_slug":"set","method_name":"SET"}],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}