{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/artenolis-automated-reproducibility-and","title":"ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software","arxiv_id":"1712.05236","date":"2017-12-01","proceeding":null,"authors":["Laurent Heirendt","Sylvain Arreckx","Christophe Trefois","Yohan Yarosz","Maharshi Vyas","Venkata P. Satagopam","Reinhard Schneider","Ines Thiele","Ronan M. T. Fleming"],"abstract":"Motivation: Automatically testing changes to code is an essential feature of continuous integration. For open-source code, without licensed dependencies, a variety of continuous integration services exist. The COnstraint-Based Reconstruction and Analysis (COBRA) Toolbox is a suite of open-source code for computational modelling with dependencies on licensed software. A novel automated framework of continuous integration in a semi-licensed environment is required for the development of the COBRA Toolbox and related tools of the COBRA community. Results: ARTENOLIS is a general-purpose infrastructure software application that implements continuous integration for open-source software with licensed dependencies. It uses a master-slave framework, tests code on multiple operating systems, and multiple versions of licensed software dependencies. ARTENOLIS ensures the stability, integrity, and cross-platform compatibility of code in the COBRA Toolbox and related tools. Availability and Implementation: The continuous integration server, core of the reproducibility and testing infrastructure, can be freely accessed under artenolis.lcsb.uni.lu. The continuous integration framework code is located in the /.ci directory and at the root of the repository freely available under github.com/opencobra/cobratoolbox.","url_abs":"https://arxiv.org/abs/1712.05236v1","url_pdf":"https://arxiv.org/pdf/1712.05236v1.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"links_only","authors_date_abstract":"arXiv metadata, CC0 1.0 (https://info.arxiv.org/help/license), from the Kaggle arXiv metadata snapshot of 2026-09-12"},"code_links":[{"paper_slug":"artenolis-automated-reproducibility-and","repo_url":"https://github.com/opencobra/cobratoolbox","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":null},{"paper_slug":"artenolis-automated-reproducibility-and","repo_url":"https://github.com/adhusch/PaCER","is_official":0,"mentioned_in_paper":0,"mentioned_in_github":1,"framework":"none","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"syntology_url":null,"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}