{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/a-novel-bayesian-spatio-temporal-model-for","title":"A Bayesian Spatio-Temporal Extension to Poisson Auto-Regression: Modeling the Disease Infection Rate of COVID-19 in England","arxiv_id":"2304.14110","date":"2023-04-27","proceeding":null,"authors":["Pierfrancesco Alaimo Di Loro","Dankmar Boehning","Sujit Sahu"],"abstract":"The COVID-19 pandemic provided many modeling challenges to investigate the evolution of an epidemic process over areal units. A suitable encompassing model must describe the spatio-temporal variations of the disease infection rate of multiple areal processes while adjusting for local and global inputs. We develop an extension to Poisson Auto-Regression that incorporates spatio-temporal dependence to characterize the local dynamics while borrowing information among adjacent areas. The specification includes up to two sets of space-time random effects to capture the spatio-temporal dependence and a linear predictor depending on an arbitrary set of covariates. The proposed model, adopted in a fully Bayesian framework and implemented through a novel sparse-matrix representation in Stan, provides a framework for evaluating local policy changes over the whole spatial and temporal domain of the study. It has been validated through a substantial simulation study and applied to the weekly COVID-19 cases observed in the English local authority districts between May 2020 and March 2021. The model detects substantial spatial and temporal heterogeneity and allows a full evaluation of the impact of two alternative sets of covariates: the level of local restrictions in place and the value of the Google Mobility Indices. The paper also formalizes various novel model-based investigation methods for assessing additional aspects of disease epidemiology.","url_abs":"https://arxiv.org/abs/2304.14110v2","url_pdf":"https://arxiv.org/pdf/2304.14110v2.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"links_only","authors_date_abstract":"arXiv metadata, CC0 1.0 (https://info.arxiv.org/help/license), from the Kaggle arXiv metadata snapshot of 2026-09-12"},"code_links":[{"paper_slug":"a-novel-bayesian-spatio-temporal-model-for","repo_url":"https://github.com/palaimo/poiar_sparseleroux","is_official":1,"mentioned_in_paper":1,"mentioned_in_github":0,"framework":"none","reach":null}],"tasks":[],"methods":[],"datasets_introduced":[],"methods_introduced":[],"results":[],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}