{"about":{"site":"https://codewithpapers.app","non_affiliation":"Code with Papers and Syntology are not affiliated with, endorsed by, or sponsored by Papers with Code, Meta, or the pwc-archive mirror.","licence":"CC BY-SA 4.0","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","attribution":"https://codewithpapers.app/attribution","modified":"archive material modified by Syntology; see the attribution page"},"url":"/paper/a-bidirectional-tree-tagging-scheme-for","title":"A Bidirectional Tree Tagging Scheme for Joint Medical Relation Extraction","arxiv_id":"2008.13339","date":"2020-08-31","proceeding":null,"authors":["Xukun Luo","Weijie Liu","Meng Ma","Ping Wang"],"abstract":"Joint medical relation extraction refers to extracting triples, composed of entities and relations, from the medical text with a single model. One of the solutions is to convert this task into a sequential tagging task. However, in the existing works, the methods of representing and tagging the triples in a linear way failed to the overlapping triples, and the methods of organizing the triples as a graph faced the challenge of large computational effort. In this paper, inspired by the tree-like relation structures in the medical text, we propose a novel scheme called Bidirectional Tree Tagging (BiTT) to form the medical relation triples into two two binary trees and convert the trees into a word-level tags sequence. Based on BiTT scheme, we develop a joint relation extraction model to predict the BiTT tags and further extract medical triples efficiently. Our model outperforms the best baselines by 2.0\\% and 2.5\\% in F1 score on two medical datasets. What's more, the models with our BiTT scheme also obtain promising results in three public datasets of other domains.","url_abs":"https://arxiv.org/abs/2008.13339v3","url_pdf":"https://arxiv.org/pdf/2008.13339v3.pdf","source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28","licence_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","row_kind":"abstracts"},"code_links":[],"tasks":[{"task_slug":"medical-relation-extraction","task_name":"Medical Relation Extraction"},{"task_slug":null,"task_name":"Relation"},{"task_slug":"relation-extraction","task_name":"Relation Extraction"}],"methods":[{"method_slug":"adam","method_name":"Adam"},{"method_slug":"attention","method_name":"Attention"},{"method_slug":"attention-dropout","method_name":"Attention Dropout"},{"method_slug":"bert","method_name":"BERT"},{"method_slug":"dense-connections","method_name":"Dense Connections"},{"method_slug":"dropout","method_name":"Dropout"},{"method_slug":"layer-normalization","method_name":"Layer Normalization"},{"method_slug":"linear-layer","method_name":"Linear Layer"},{"method_slug":"linear-warmup-with-linear-decay","method_name":"Linear Warmup With Linear Decay"},{"method_slug":"multi-head-attention","method_name":"Multi-Head Attention"},{"method_slug":"residual-connection","method_name":"Residual Connection"},{"method_slug":"softmax","method_name":"Softmax"},{"method_slug":"weight-decay","method_name":"Weight Decay"},{"method_slug":"wordpiece","method_name":"WordPiece"}],"datasets_introduced":[],"methods_introduced":[],"results":[{"leaderboard":"/sota/relation-extraction-on-duie","task":"Relation Extraction","dataset":"DuIE","model":"BiTT","rank_in_archive_order":1,"of":1,"metrics":{"F1":"76.9"},"uses_additional_data":false}],"syntology":{"atlas_url":null,"mcp":null,"developers":"https://syntology.ai/developers"},"arxiv_metadata":null,"syntology_extracted_results":null}