{"url":"/dataset/tc1-mouse-cerebellum-atlas","name":"Tc1 Mouse cerebellum atlas","full_name":"Tc1 Mouse cerebellum atlas with Purkinje layer segmentation","description_markdown":"[![DOI](https://zenodo.org/badge/166476589.svg)](https://zenodo.org/badge/latestdoi/166476589)\r\n\r\nThis mouse cerebellar atlas can be used for  mouse cerebellar morphometry.\r\n\r\nWe recommend to use [Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI](https://github.com/dancebean/multi-atlas-segmentation) along with other [mouse brain atlases](../../../) in this repo.\r\n\r\n## Reference/citation:\r\n- If you're using the this mouse MRI cerebellar atlas in your paper, we ask you to please kindly cite the following papers:\r\n  - Ma, D., Cardoso, M. J., Zuluaga, M. A., Modat, M., Powell, N. M., Wiseman, F. K., Cleary, J. O., Sinclair, B., Harrison, I. F., Siow, B., Popuri, K., Lee, S., Matsubara, J. A., Sarunic, M. V, Beg, M. F., Tybulewicz, V. L. J., Fisher, E. M. C., Lythgoe, M. F., & Ourselin, S. (2020). **Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellum of the Tc1 mouse model of Down Syndrome – a comprehensive morphometric analysis with active staining contrast-enhanced MRI**. NeuroImage, 117271. https://doi.org/https://doi.org/10.1016/j.neuroimage.2020.117271\r\n  - Ma, D., Cardoso, M. J., Zuluaga, M. A., Modat, M., Powell, N., Wiseman, F., Tybulewicz, V., Fisher, E., Lythgoe, M. F., & Ourselin, S. (2015). **Grey Matter Sublayer Thickness Estimation in the Mouse Cerebellum**. In Medical Image Computing and Computer Assisted Intervention 2015 (pp. 644–651). https://doi.org/10.1007/978-3-319-24574-4_77","description_withheld":null,"homepage":"https://github.com/dancebean/mouse-brain-atlas/edit/master/Tc1_Cerebellum","introduced_date":"2019-01-08","introduced_date_note":null,"introduced_by":{"paper":"/paper/grey-matter-sublayer-thickness-estimation-in","title":"Grey matter sublayer thickness estimation in themouse cerebellum","first_author":"Da Ma","url":null},"license":{"name":"GPL-3.0 License","url":"https://github.com/dancebean/mouse-brain-atlas/blob/master/LICENSE"},"modalities":[{"name":"Images","url":"/datasets/modality/images"},{"name":"3D","url":"/datasets/modality/3d"},{"name":"Biomedical","url":"/datasets/modality/biomedical"},{"name":"Medical","url":"/datasets/modality/medical"},{"name":"MRI","url":"/datasets/modality/mri"}],"tasks":[{"name":"Brain Segmentation","url":"/task/brain-segmentation","datasets_with_task":"/datasets/task/brain-segmentation"}],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["Tc1 Mouse cerebellum atlas"],"data_loaders":[],"num_papers_in_archive":2,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[],"papers_with_a_benchmark_row":[],"syntology_totals":{"read_at":"2026-09-24T18:15:14+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}