{"url":"/dataset/paragraph-expanded","name":"Paragraph Expanded","full_name":"Paragraph Expanded","description_markdown":"To take advantage of the ever-increasing amount of structural data now available, we also trained Paragraph on a larger dataset. This new dataset was extracted from the Structural Antibody Database (SAbDab, Schneider et al., 2022) on March 31, 2022 and includes 1086 complexes which we divide into train, validation and test sets using a 60-20-20 split. Full details of both datasets are given in the Supplementary Information.","description_withheld":null,"homepage":"https://github.com/oxpig/Paragraph","introduced_date":"2022-11-12","introduced_date_note":null,"introduced_by":null,"license":{"name":"BSD-3-Clause license","url":null},"modalities":[{"name":"Biology","url":"/datasets/modality/biology"},{"name":"Biomedical","url":"/datasets/modality/biomedical"}],"tasks":[{"name":"Antibody-antigen binding prediction","url":"/task/antibody-antigen-binding-prediction","datasets_with_task":"/datasets/task/antibody-antigen-binding-prediction"}],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["Paragraph Expanded"],"data_loaders":[],"num_papers_in_archive":2,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[{"leaderboard":"/sota/antibody-antigen-binding-prediction-on-1","task":"Antibody-antigen binding prediction","dataset_variant":"Paragraph Expanded","rows":2,"metrics":["AUC-PR","AUC-ROC"],"first_row_in_archive_order":{"model":"ParaSurf","paper":"/paper/parasurf-a-surface-based-deep-learning","metrics":{"AUC-PR":"0.793","AUC-ROC":"0.967"},"code_links":[{"title":"aggelos-michael-papadopoulos/ParaSurf","url":"https://github.com/aggelos-michael-papadopoulos/ParaSurf"}]},"note":"rows are the archive's own order at snapshot; nothing here re-ranks them"}],"papers_with_a_benchmark_row":[{"paper":"/paper/parasurf-a-surface-based-deep-learning","title":"ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interaction Prediction","date":"2025-02-08","rows_on_this_dataset":1,"code_links":1,"syntology":null},{"paper":"/paper/paragraph-antibody-paratope-prediction-using","title":"Paragraph—antibody paratope prediction using graph neural networks with minimal feature vectors","date":"2022-10-12","rows_on_this_dataset":1,"code_links":1,"syntology":null}],"syntology_totals":{"read_at":"2026-09-25T09:33:49+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}