{"url":"/dataset/pancancer-multimodal","name":"PanCancer Multimodal","full_name":"HoneyBee","description_markdown":"# Dataset Card for The Cancer Genome Atlas (TCGA) Multimodal Dataset\r\n<!-- Provide a quick summary of the dataset. -->\r\n\r\nThe Cancer Genome Atlas (TCGA) Multimodal Dataset is a comprehensive collection of clinical data, pathology reports, molecular, and slide images for cancer patients. \r\nThis dataset aims to facilitate research in multimodal machine learning for oncology by providing embeddings generated using state-of-the-art models such as GatorTron, SeNMo, and UNI.\r\n\r\n- **Curated by:** Lab Rasool\r\n- **Language(s) (NLP):** English\r\n\r\n\r\n## Uses\r\n<!-- Address questions around how the dataset is intended to be used. -->\r\n\r\n```python\r\nfrom datasets import load_dataset\r\n\r\nclinical_dataset = load_dataset(\"Lab-Rasool/TCGA\", \"clinical\", split=\"train\")\r\npathology_report_dataset = load_dataset(\"Lab-Rasool/TCGA\", \"pathology_report\", split=\"train\")\r\nwsi_dataset = load_dataset(\"Lab-Rasool/TCGA\", \"wsi\", split=\"train\")\r\nmolecular_dataset = load_dataset(\"Lab-Rasool/TCGA\", \"molecular\", split=\"train\")\r\n```","description_withheld":null,"homepage":"https://huggingface.co/datasets/Lab-Rasool/TCGA","introduced_date":"2024-05-13","introduced_date_note":null,"introduced_by":{"paper":"/paper/honeybee-a-scalable-modular-framework-for","title":"HoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models","first_author":"Aakash Tripathi","url":null},"license":{"name":"CC-BY-NC-ND-4.0","url":null},"modalities":[{"name":"Images","url":"/datasets/modality/images"},{"name":"Texts","url":"/datasets/modality/texts"},{"name":"Medical","url":"/datasets/modality/medical"},{"name":"Tabular","url":"/datasets/modality/tabular"}],"tasks":[],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["PanCancer Multimodal"],"data_loaders":[],"num_papers_in_archive":2,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[],"papers_with_a_benchmark_row":[],"syntology_totals":{"read_at":"2026-09-24T18:15:14+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}