{"url":"/dataset/drosophila-immunity-time-course-data","name":"Drosophila Immunity Time-Course Data","full_name":null,"description_markdown":"The data used for all results in this paper can be found [here](https://github.com/sara-venkatraman/Bayesian-Gene-Dynamics/tree/master/Data). This directory contains:\r\n\r\n* `GeneData.csv`: Contains temporal gene expression measurements for 1735 genes at 17 time points. Measurements are provided as the $\\log_2$-fold change from first time point. Hours corresponding to each time point are defined in the R script [`3_Results.R`](https://github.com/sara-venkatraman/Bayesian-Gene-Dynamics/blob/master/3_Results.R#L23) in our GitHub repository. This dataset is derived from a larger gene expression dataset collected by [Schlamp et al. (2021)](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA641552). \r\n* `PriorMatrix.csv`: A 1735 x 1735 prior adjacency matrix. Each entry is `0`, `1`, or `NA` to indicate that a biological relationship between the corresponding two genes is unlikely, likely, or unknown according to external databases.\r\n\r\nFurther details about the collection of this data can be found in Section 4.1 and Appendix C of our paper. The R script `3_Results.R` shows how these CSV files are read and used for our analysis.","description_withheld":null,"homepage":"https://github.com/sara-venkatraman/Bayesian-Gene-Dynamics","introduced_date":null,"introduced_date_note":null,"introduced_by":null,"license":null,"modalities":[{"name":"Biology","url":"/datasets/modality/biology"},{"name":"Tabular","url":"/datasets/modality/tabular"},{"name":"Time series","url":"/datasets/modality/time-series"}],"tasks":[{"name":"Time Series Clustering","url":"/task/time-series-clustering","datasets_with_task":"/datasets/task/time-series-clustering"}],"languages":[{"name":"English","url":"/datasets/language/english"}],"variants":["Drosophila Immunity Time-Course Data"],"data_loaders":[],"num_papers_in_archive":1,"source":{"archive":"pwc-archive (Hugging Face), CC BY-SA 4.0","snapshot":"2025-07-28"},"benchmarks":[],"papers_with_a_benchmark_row":[],"syntology_totals":{"read_at":"2026-09-25T09:33:49+00:00","papers_with_samples":0,"samples_harvested":0,"samples_ran":0,"samples_unverified":0,"pointer_only_for_licence":0,"papers_with_no_sample_that_ran":0,"note":"the per-paper counts above, summed; not a rate"},"papers_note":"The archive never published its papers-using-dataset list; these are papers with a leaderboard row on this dataset's benchmarks."}